Homepage of Dr. Susmita Ghosh - Department of Theoretical Physics II

Dr. Susmita Ghosh

Dr. Susmita Ghosh
Postdoctoral Researcher

Institut für Theoretische Physik II - Soft Matter
Heinrich-Heine-Universität Düsseldorf
Building 25.22
Room O2.22
Universitätsstraße 1
D-40225 Düsseldorf, Germany

phone: +49-211-81-15873
e-mail: Susmita.Ghosh <at> hhu.de

Research

Active Microrheology in Deeply Supercooled Liquids (Ongoing project)
Development of Enhanced Kinetic Sampling Method for Biomolecular Simulation
Structure, Stability, Dynamics and Function of Protein and Nucleic acid
Protein-Protein, Protein-DNA/RNA interaction and antimicrobial protein-membrane interaction
Polyelectrolyte System

Methods

Classical MD (All-atom and Coarse-grained level) simulation
Monte Carlo Simulation

Simulation Packages

LAMMPS
Nanoscale Molecular Dynamics -NAMD
GROMACS

Curriculum Vitae

2023-present	Postdoctoral Research Fellow at the Institute for Theoretical Physics II, Heinrich-Heine University Düsseldorf
2018-2022	Postdoctoral Research Fellow at the Institute for Computational Biology, The Institute of Mathematcal Sciences, Chennai, India
2013-2018	PhD in Physics at the Department of Physics, Indian Institute of Technology Guwahati, Guwahati, India
2011-2013	Master of Science in Physics at the Department of Physics, Indian Institute of Technology Guwahati, Guwahati, India
2008-2011	Bachelor of Science in Physics at the Barasat Govt. College, West Bengal State University, India

Publications

A. Bhoutekar, S. Ghosh, S. Bhattacharya, and A. Chatterjee. A new class of enhanced kinetic sampling methods for building Markov state models. J. Chem. Phys., 147, 152702 (2017).
S. Ghosh, A. Chatterjee, and S. Bhattacharya. Time-dependent Markov state model for single molecule force spectroscopy. J. Chem. Theory Comput. (Letter), 13, 957-962 (2017)
S. Ghosh, A. Chatterjee, and S. Bhattacharya. Accelerated Construction of Kinetic Network Model of Biomolecules Using Steered Molecular Dynamics. J. Chem. Theory Comput., 14, 5393-5405 (2018).
S. Ghosh, T. Debanand, U. Baul, S. Vemparala, Aggregation dynamics of charged peptides in water: Effect of salt concentration. J. Chem. Phys., 151(7):074901 (2019).
S.Ghosh and S. Vemparala. Kinetics of charged polymer collapse in poor solvents. J. Phys. Condens. Matter, 34, 045101 (2021)
T. Debanand, S. Ghosh, P. Venkatraman and S. Vemparala. Phosphorylation of interfacial phosphosite leads to increased binding of Rap-Raf complex. bioRxiv:2021.12.19.473331
Kotaro Hayashi, Junichi Kurita, Susmita Ghosh, Yoshifumi Nishimura, Kazunori Kataoka, Satyavani Vemparala, Kensuke Osada, Cationic poly (amino acid) structure for effective siRNA binding examined by a unit polyion complex. (Unpublished)
S. Ghosh and S. Vemparala. Accelerated Collapse Kinetics of Charged Polymers in Good Solvent: Role of Counterion Condensation. arXiv:2504.12642

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